{"id":4919,"date":"2020-01-07T19:09:39","date_gmt":"2020-01-07T10:09:39","guid":{"rendered":"http:\/\/163.180.4.222\/lab\/?p=4919"},"modified":"2020-01-07T19:09:39","modified_gmt":"2020-01-07T10:09:39","slug":"gene-expression-regulated-by-rna-stability","status":"publish","type":"post","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=4919","title":{"rendered":"Gene expression regulated by RNA stability"},"content":{"rendered":"<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p id=\"p-4\">One of the first discoveries of gene expression mediated by controlling messenger RNA (mRNA) stability is autoregulation of tubulin synthesis. In this regulatory process, the concentration of tubulin subunits modulates the stability of the mRNAs from which they are translated (<a id=\"xref-ref-1-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-1\"><em>1<\/em><\/a>,\u00a0<a id=\"xref-ref-2-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-2\"><em>2<\/em><\/a>). In the 1980s it was found that only translated tubulin mRNAs are autoregulated (<a id=\"xref-ref-3-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-3\"><em>3<\/em><\/a>) and that translation had to continue through at least 41 amino acids (<a id=\"xref-ref-4-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-4\"><em>4<\/em><\/a>). This is enough for the nascent tubulin polypeptide to emerge from the ribosome (<a id=\"xref-ref-5-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-5\"><em>5<\/em><\/a>). Later work established that when the tubulin subunit pool is high, the first four amino acids (Met-Arg-Glu-Ile, MREI) emerging during nascent tubulin translation serve as a regulatory tag. Recognition of this tag promoted the degradation of the translating tubulin mRNA (<a id=\"xref-ref-4-2\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-4\"><em>4<\/em><\/a>,\u00a0<a id=\"xref-ref-6-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-6\"><em>6<\/em><\/a>\u2013<a id=\"xref-ref-8-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-8\"><em>8<\/em><\/a>). More than 30 years later, on page 100 of this issue, Lin\u00a0<em>et al.<\/em>\u00a0(<a id=\"xref-ref-9-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-9\"><em>9<\/em><\/a>) identify tetratricopeptide repeat protein 5 (TTC5) as the regulator that binds to nascent tubulin polypeptides.<\/p>\n<p id=\"p-5\">With the exception of a high-resolution confirmation that an elevated pool of tubulin subunits selectively represses tubulin synthesis (<a id=\"xref-ref-8-2\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-8\"><em>8<\/em><\/a>), no progress toward understanding the autoregulation of tubulin expression was made since 1988. The most attractive model for how the pool size of tubulin subunits could trigger rapid mRNA degradation to suppress new tubulin synthesis was that it was the tubulin \u03b1\/\u03b2 dimer, the unit that assembles into microtubules, that cotranslationally bound to the MREI tetrapeptide. Lin\u00a0<em>et al.<\/em>\u00a0disprove this model. They use mass spectrometry and in vitro translation of an mRNA encoding the first 94 amino acids of \u03b2-tubulin to identify TTC5 as the protein that recognizes the nascent \u03b2-tubulin MREI tetrapeptide in complex with the large ribosomal subunit.<\/p>\n<p>\u03b1- and \u03b2-tubulin form a heterodimer that serves as the building block for microtubule polymers, the tracks along which cargoes are moved by dynein and kinesin family motors. During cell duplication, microtubule-directed trafficking is essential for delivery to each daughter cell of a complete set of chromosomes. By inactivating both maternal and paternal copies of the gene encoding TTC5, Lin\u00a0<em>et al.<\/em>\u00a0demonstrate that tubulin autoregulation is essential for maintaining faithful chromosome segregation, with a modest increase in chromosome segregation errors in the absence of TTC5. Errors in chromosome inheritance are key drivers of tumorigenesis, so maintenance of the genome is important (<a id=\"xref-ref-10-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-10\"><em>10<\/em><\/a>). However, Lin\u00a0<em>et al.<\/em>\u00a0have determined that cells with inactivated tubulin autoregulation are viable and can continue to survive and duplicate. This is unexpected because disruption of autoregulation would be predicted to yield runaway tubulin synthesis, which in turn should have severely disrupted microtubule assembly dynamics and function. Perhaps additional factors are involved, the activities of which might compensate, to some extent, for the lack of TTC5 activity.<\/p>\n<p>&nbsp;<\/p>\n<figure id=\"F1\" class=\"fig pos-float type-figure  odd figure figure--data\">\n<div class=\"figure__head highwire-figure\">\n<div class=\"fig-inline\"><a class=\"fragment-images colorbox-load highwireFiguresMarkupProcessor-processed cboxElement\" style=\"box-sizing: inherit; background-color: transparent; color: #37588a; text-decoration: none; font-weight: bold;\" title=\"Autoregulation of tubulin RNA Tubulin messenger RNA (mRNA) instability is mediated by cotranslational binding of tetratricopeptide repeat protein 5 (TTC5) to the tubulin amino-terminal tetrapeptide MREI and activation of one or more ribosome-associated nucleases.\" href=\"https:\/\/science.sciencemag.org\/content\/sci\/367\/6473\/29\/F1.large.jpg?width=800&amp;height=600&amp;carousel=1\" rel=\"gallery-fragment-images-478493806\" data-figure-caption=\"&lt;div class=&quot;highwire-markup&quot;&gt;&lt;span class=&quot;caption-title&quot;&gt;Autoregulation of tubulin RNA&lt;\/span&gt;&lt;p id=&quot;p-7&quot; class=&quot;first-child&quot;&gt;Tubulin messenger RNA (mRNA) instability is mediated by cotranslational binding of tetratricopeptide repeat protein 5 (TTC5) to the tubulin amino-terminal tetrapeptide MREI and activation of one or more ribosome-associated nucleases.&lt;\/p&gt;&lt;q class=&quot;attrib&quot; id=&quot;attrib-1&quot;&gt;GRAPHIC: V. ALTOUNIAN\/&lt;em&gt;SCIENCE&lt;\/em&gt;&lt;\/q&gt;&lt;div class=&quot;sb-div caption-clear&quot;\/&gt;&lt;\/div&gt;\" data-icon-position=\"\" data-hide-link-title=\"0\"><span class=\"hw-responsive-img\"><img decoding=\"async\" class=\"fragment-image  lazyloaded\" src=\"https:\/\/science.sciencemag.org\/content\/sci\/367\/6473\/29\/F1.medium.gif\" aria-describedby=\"F1-caption\" data-src=\"https:\/\/science.sciencemag.org\/content\/sci\/367\/6473\/29\/F1.medium.gif\" \/><\/span><\/a><\/div>\n<div class=\"figure__options\">\n<ul class=\"highwire-figure-links\">\n<li class=\"0 first\"><a class=\"highwire-figure-link highwire-figure-link-download link-icon\" title=\"Download Figure1\" href=\"https:\/\/science.sciencemag.org\/content\/sci\/367\/6473\/29\/F1.large.jpg?download=true\"><i class=\"fa fa-download\"><\/i>\u00a0<span class=\"title\">Download high-res image<\/span><\/a><\/li>\n<li class=\"1\"><a class=\"highwire-figure-link highwire-figure-link-newtab link-icon\" href=\"https:\/\/science.sciencemag.org\/content\/sci\/367\/6473\/29\/F1.large.jpg\" target=\"_blank\" rel=\"noopener noreferrer\"><i class=\"fa fa-external-link\"><\/i>\u00a0<span class=\"title\">Open in new tab<\/span><\/a><\/li>\n<li class=\"2 last\"><a class=\"highwire-figure-link highwire-figure-link-ppt link-icon\" href=\"https:\/\/science.sciencemag.org\/highwire\/powerpoint\/736961\"><i class=\"fa fa-download\"><\/i>\u00a0<span class=\"title\">Download Powerpoint<\/span><\/a><\/li>\n<\/ul>\n<\/div>\n<\/div><figcaption id=\"F1-caption\" class=\"fig-caption attrib\"><span class=\"caption-title\">Autoregulation of tubulin RNA<\/span><\/p>\n<p id=\"p-7\" class=\"first-child\">Tubulin messenger RNA (mRNA) instability is mediated by cotranslational binding of tetratricopeptide repeat protein 5 (TTC5) to the tubulin amino-terminal tetrapeptide MREI and activation of one or more ribosome-associated nucleases.<\/p>\n<p><q id=\"attrib-1\" class=\"attrib\">GRAPHIC: V. ALTOUNIAN\/<em>SCIENCE<\/em><\/q><\/p>\n<div class=\"sb-div caption-clear\"><\/div>\n<\/figcaption><\/figure>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p id=\"p-8\">The new work also casts doubt on the notion that the tubulin concentration directly participates in the ribosomal complex with TTC5 and the MREI peptide. Instead, the findings of Lin\u00a0<em>et al.<\/em>\u00a0support a counterintuitive model in which cells ordinarily contain a cytosolic factor that prevents TTC5 binding to MREI-ribosome complexes and that this inhibitor is inactivated when the tubulin dimer concentration increases (see the figure).<\/p>\n<p id=\"p-9\">The study of Lin\u00a0<em>et al.<\/em>\u00a0is a major step in deciphering a regulatory pathway for controlling expression of an important cellular product (tubulin) through cotranslationally mediated mRNA instability. It should be noted, however, that important steps in the autoregulatory pathway remain unidentified, including (i) the factor that inhibits TTC5 binding activity when tubulin levels are normal, (ii) the newly proposed autoregulatory signal generated by an increased pool of tubulin subunits, (iii) the nuclease(s) that mediate tubulin mRNA degradation, and (iv) the activation of those nucleases once TTC5 recognizes the nascent tubulin peptide.<\/p>\n<p id=\"p-10\">This may only be the tip of the iceberg for cotranslational control of gene expression. Work in yeast suggests that mRNA decay through cotranslational regulation is widespread (<a id=\"xref-ref-11-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-11\"><em>11<\/em><\/a>) and that it involves a 59-to-39 RNA exoribonuclease 1 (xrn1) (<a id=\"xref-ref-12-1\" class=\"xref-bibr\" href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29#ref-12\"><em>12<\/em><\/a>). The TTC5 structure bound to a ribosome, as beautifully determined by Lin\u00a0<em>et al.<\/em>, provides clues that might allow the identification of additional regulators (perhaps containing the same tetratricopeptide repeats found in TTC5) that can bind the ribosome exit tunnel and simultaneously recognize targets encoded by different mRNAs.<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>(\uc6d0\ubb38: <a href=\"https:\/\/science.sciencemag.org\/content\/367\/6473\/29\">\uc5ec\uae30<\/a>\ub97c \ud074\ub9ad\ud558\uc138\uc694~)<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>&nbsp; &nbsp; One of the first discoveries of gene expression mediated by controlling messenger RNA (mRNA) stability is autoregulation of tubulin synthesis. In this regulatory<a href=\"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=4919\" class=\"more-link\">(more&#8230;)<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2},"jetpack_post_was_ever_published":false},"categories":[33,29],"tags":[],"class_list":["post-4919","post","type-post","status-publish","format-standard","hentry","category-do-biology","category-lets-do-science"],"aioseo_notices":[],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack-related-posts":[{"id":3893,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=3893","url_meta":{"origin":4919,"position":0},"title":"Epigenetics comes to RNA","author":"biochemistry","date":"July 16, 2019","format":false,"excerpt":"\u00a0 \u00a0 An enzyme (pink) places a chemical mark (gold) on messenger RNA (blue), in an artist's concept. IMAGE: STORM THERAPEUTICS \u00a0 \u00a0 The idea that chemical tags on genes can affect their expression without altering the DNA sequence, once surprising, is the stuff of textbooks. The phenomenon, epigenetics, has\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":896,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=896","url_meta":{"origin":4919,"position":1},"title":"Tackling microtubule-tau interactions","author":"biochemistry","date":"June 16, 2018","format":false,"excerpt":"\u00a0 \u00a0 (\uc6d0\ubb38) \u00a0 Science\u00a0\u00a015 Jun 2018: Vol. 360, Issue 6394, pp. 1198-1200 DOI: 10.1126\/science.360.6394.1198-n \u00a0 \u00a0 Alzheimer's disease is a major cause of death in the elderly. Disease progression is associated with the accumulation of neurofibrillary tangles composed of tau, a protein important for neuronal development and function. Tangle\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":4481,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=4481","url_meta":{"origin":4919,"position":2},"title":"RNA therapies explained","author":"biochemistry","date":"October 18, 2019","format":false,"excerpt":"\u00a0 Treatments that target RNA or deliver it to cells fall into three broad categories, with hybrid approaches also emerging. \u00a0 \u00a0 Illustration of messenger RNA (red) produced from a DNA strand (purple).\u00a0Credit: Juan Gaertner\/SPL \u00a0 \u00a0 The conventional view of RNA casts the molecule in a supporting role \u2014\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":1495,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=1495","url_meta":{"origin":4919,"position":3},"title":"Protein complexes assemble as they are being made","author":"biochemistry","date":"August 30, 2018","format":false,"excerpt":"\u00a0 \u00a0 (\uc6d0\ubb38) \u00a0 \u00a0 An investigation finds that most protein complexes in yeast cells assemble before the subunits have fully formed. This mechanism might prevent the formation of toxic protein aggregates. \u00a0 \u00a0 Most cellular processes are carried out by proteins, which generally assemble into heteromeric complexes \u2014 those\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":1316,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=1316","url_meta":{"origin":4919,"position":4},"title":"Technique to measure the expression dynamics of each gene in a single cell","author":"biochemistry","date":"August 9, 2018","format":false,"excerpt":"\u00a0 \u00a0 (\uc6d0\ubb38) \u00a0 \u00a0 A method has been developed to infer whether the expression of each gene in a single cell is increasing or decreasing, and at what rate, using RNA-sequencing data. This tool has many potential applications. \u00a0 \u00a0 To understand and control complex systems, we must be\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":4784,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=4784","url_meta":{"origin":4919,"position":5},"title":"Beyond the genome: RNA control of stem cells","author":"biochemistry","date":"November 8, 2019","format":false,"excerpt":"\u00a0 \u00a0 Tissue-resident stem cells are important for maintaining proper organ and tissue function throughout the lifetime of mammals. Although some types of stem cells constantly proliferate and give rise to committed progeny, such as intestine and skin, others reside mainly in a quiescent (noncycling) state, such as skeletal muscle.\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]}],"jetpack_sharing_enabled":false,"jetpack_shortlink":"https:\/\/wp.me\/p9Xo1j-1hl","_links":{"self":[{"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/posts\/4919","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=4919"}],"version-history":[{"count":1,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/posts\/4919\/revisions"}],"predecessor-version":[{"id":4920,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/posts\/4919\/revisions\/4920"}],"wp:attachment":[{"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=4919"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=4919"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=4919"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}