{"id":4128,"date":"2019-09-26T14:43:38","date_gmt":"2019-09-26T05:43:38","guid":{"rendered":"http:\/\/163.180.4.222\/lab\/?p=4128"},"modified":"2019-09-26T14:43:38","modified_gmt":"2019-09-26T05:43:38","slug":"with-crispr-and-machine-learning-startups-fast-track-crops-to-consume-less-produce-more","status":"publish","type":"post","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=4128","title":{"rendered":"With CRISPR and machine learning, startups fast-track crops to consume less, produce more"},"content":{"rendered":"<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<h5>Small players take on big seed conglomerates with next-generation non-GMO crops.<\/h5>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>Agbiotech newcomer Inari has raised $89 million to pursue an ambitious goal: to challenge the status quo in agriculture.<\/p>\n<p>&nbsp;<\/p>\n<figure class=\"figure\">\n<div class=\"embed intensity--medium\">\n<div class=\"embed intensity--medium\"><img decoding=\"async\" class=\"figure__image\" src=\"https:\/\/media.nature.com\/w800\/magazine-assets\/d41587-019-00027-2\/d41587-019-00027-2_17207312.jpg\" alt=\"\" data-src=\"\/\/media.nature.com\/w800\/magazine-assets\/d41587-019-00027-2\/d41587-019-00027-2_17207312.jpg\" \/><\/div>\n<\/div><figcaption>\n<p class=\"figure__caption sans-serif\"><span class=\"mr10\">Plants edited with the new genome editing tools will incorporate useful traits and will not be classed as GMOs.<\/span>Credit: reHAWKEYE \/ Alamy Stock Photo<\/p>\n<\/figcaption><\/figure>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>Inari, based in Cambridge, Massachusetts, plans to use the total $144 million it has raised so far to develop crops that are more productive and consume less water and fertilizer than those currently produced by seed conglomerates. The company will focus on major crops such as corn, soybean, wheat and tomato. \u201cAll the genetics [for these crops] are owned by just a couple of multinational companies, and we want to challenge that,\u201d says Ponsi Trivisvavet, CEO of Inari. \u201cWe want to bring back genetic diversity to make seeds that are better for the environment and the farmer,\u201d she says.<\/p>\n<p>Inari is one of a several small companies with similarly lofty goals who are capitalizing on new editing technologies, such as CRISPR, and computational methods for predictive modeling. Such tools make crop development faster and less expensive, and potentially could give startups a shot at competing with the big players by sidestepping onerous and expensive regulatory oversight.<\/p>\n<p>Just a few years ago, a seed developer could plan on spending a decade and up to $100 million on bringing one new crop trait to market (<a href=\"https:\/\/doi.org\/10.1038\/nbt0517-397\" data-track=\"click\" data-label=\"https:\/\/doi.org\/10.1038\/nbt0517-397\" data-track-category=\"body text link\">Nat. Biotechnol.\u00a0<b>35<\/b>, 396\u2013398, 2017<\/a>). That\u2019s not only because the old tools for altering the genetics of these crops, such as\u00a0<i>Agrobacterium<\/i>-mediated transformation, were slower, more expensive and more unpredictable than CRISPR, but also because of regulations, both in the United States and especially in Europe. Companies had to present years of field data to regulators before they could sell the seeds. And the final food products were often marked \u201cGMO,\u201d a label distasteful to the public, presenting marketing challenges.<\/p>\n<p>These barriers kept many would-be small players out of the industry. Trivisvavet says that with new tools, her company can develop crops for a fraction of the cost and time previously required. And so far, it appears that CRISPR-edited plants won\u2019t trigger US regulatory oversight or a GMO label (<a href=\"https:\/\/doi.org\/10.1038\/nbt0118-6b\" data-track=\"click\" data-label=\"https:\/\/doi.org\/10.1038\/nbt0118-6b\" data-track-category=\"body text link\">Nat. Biotechnol.\u00a0<b>36<\/b>, 6\u20137, 2018<\/a>).<\/p>\n<p>Of course, scientists working for multinational seed companies like Corteva Agriscience, Bayer, Syngenta and BASF almost certainly have at their fingertips similar computational and genome editing tools. \u201cSo the foot race is on between the newcomers and the established players,\u201d says Ron Meeusen, managing director at Chicago-based Cultivian Sandbox, a venture capital firm focused on food and agriculture technologies that has not invested in Inari. \u201cBut startups are nimble, and if they can get there first on a given trait\u2014say a one- or two-year lead\u2014that can be a significant advantage in market share,\u201d he says.<\/p>\n<p>Trivisvavet says Inari\u2019s exclusive access to two particular technologies gives the company an edge. From the University of California, Los Angeles the company has licensed patents that describe key epigenetic pathways in plants and methods based on CRISPR for altering DNA methylation and gene regulation (<a href=\"https:\/\/doi.org\/10.1038\/s41467-019-08736-7\" data-track=\"click\" data-label=\"https:\/\/doi.org\/10.1038\/s41467-019-08736-7\" data-track-category=\"body text link\">Nat. Commun.\u00a0<b>10<\/b>, 729, 2019<\/a>). And through an exclusive deal with Cold Spring Harbor Laboratory, Inari has licensed a CRISPR-based tool for editing promoters, which are the genetic components that influence the way genes are expressed (<a href=\"https:\/\/doi.org\/10.1016\/j.cell.2017.08.030\" data-track=\"click\" data-label=\"https:\/\/doi.org\/10.1016\/j.cell.2017.08.030\" data-track-category=\"body text link\">Cell\u00a0<b>171<\/b>, 470\u2013480, 2017<\/a>).<\/p>\n<p>Meanwhile, other startups capitalizing on CRISPR\u2013Cas9 and similar editing tools, as well as computational science, are making their own plays. Benson Hill, in St. Louis, offers a platform called CropOS that speeds the development of crops using a combination of machine learning, big data, genome editing and plant biology. Pairwise, based in Durham, North Carolina, uses genome editing to leverage natural diversity in major crops such as corn, soybeans, wheat, cotton and canola, and in March 2018 announced a $100 million collaboration with Monsanto (now Bayer).<\/p>\n<p>And Indigo, in Boston, announced in September 2018 a $250 million series E financing, bringing its total to a whopping $650 million. The company develops cocktails of microbes using predictive machine learning algorithms, sells seeds coated with the proprietary microbial mix directly to farmers (<a href=\"https:\/\/doi.org\/10.1038\/nbt1217-1120\" data-track=\"click\" data-label=\"https:\/\/doi.org\/10.1038\/nbt1217-1120\" data-track-category=\"body text link\">Nat. Biotechnol.\u00a0<b>35<\/b>, 1120\u20131122, 2017<\/a>), and has launched an online marketplace to connect growers and buyers.<\/p>\n<p>Inari, for its part, is shaking up the status quo in other ways. About 50% of its scientists are women, Trivisvavet says. The company was founded in 2016 by Flagship Pioneering, which contributed to the latest funding round, along with the Investment Corporation of Dubai in the United Arab Emirates, EDBI in Singapore, and other investors.<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>(\uc6d0\ubb38: <a href=\"https:\/\/www.nature.com\/articles\/d41587-019-00027-2?utm_source=feedburner&amp;utm_medium=feed&amp;utm_campaign=Feed%3A+nbt%2Frss%2Fcurrent+%28Nature+Biotechnology+-+Issue%29\">\uc5ec\uae30<\/a>\ub97c \ud074\ub9ad\ud558\uc138\uc694~)<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>&nbsp; &nbsp; Small players take on big seed conglomerates with next-generation non-GMO crops. &nbsp; &nbsp; Agbiotech newcomer Inari has raised $89 million to pursue an<a href=\"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=4128\" class=\"more-link\">(more&#8230;)<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2},"jetpack_post_was_ever_published":false},"categories":[32,33,34,35,29,30],"tags":[],"class_list":["post-4128","post","type-post","status-publish","format-standard","hentry","category-essays-on-science","category-do-biology","category-lets-do-chemistry","category-lets-do-computer-science","category-lets-do-science","category-recent-science-news"],"aioseo_notices":[],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack-related-posts":[{"id":3530,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=3530","url_meta":{"origin":4128,"position":0},"title":"Russia joins in global gene-editing bonanza","author":"biochemistry","date":"May 16, 2019","format":false,"excerpt":"\u00a0 \u00a0 A US$1.7-billion programme aims to develop 30 gene-edited plant and animal varieties in the next decade. \u00a0 Sugar beet is one of four crops listed as a priority for Russian gene-editing research.\u00a0Credit: Bloomberg\/Getty \u00a0 \u00a0 Russia is embracing gene-editing. A 111-billion-rouble (US$1.7-billion) federal programme aims to create 10\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":2997,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=2997","url_meta":{"origin":4128,"position":1},"title":"Endogenous gene editing","author":"biochemistry","date":"March 29, 2019","format":false,"excerpt":"\u00a0 \u00a0 Genetically modified crops have supporters and opponents, but how can these views be reconciled to improve food security? This problem is particularly acute for middle-income countries that need to export crops to maintain their economy as well as provide for their expanding population. In a Perspective, Zaidi\u00a0et al.\u00a0discuss\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":1025,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=1025","url_meta":{"origin":4128,"position":2},"title":"Getting it right on GMOs","author":"biochemistry","date":"July 2, 2018","format":false,"excerpt":"\u00a0 \u00a0 (\uc6d0\ubb38: \uc5ec\uae30\ub97c \ud074\ub9ad\ud558\uc138\uc694~) \u00a0 \u00a0 Seeds of Science: Why We Got It So Wrong on GMOs\u00a0Mark Lynas\u00a0Bloomsbury Sigma, 2018. 304 pp. Science\u00a0\u00a029 Jun 2018: Vol. 360, Issue 6396, pp. 1407 DOI: 10.1126\/science.aat8772 \u00a0 \u00a0 As a biologist working to understand how plants sense and survive in stressful environments,\u2026","rel":"","context":"In &quot;Essays on Science&quot;","block_context":{"text":"Essays on Science","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=32"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":1535,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=1535","url_meta":{"origin":4128,"position":3},"title":"Canine CRISPR trial raises \ufeffhopes for humans with deadly disease","author":"biochemistry","date":"September 2, 2018","format":false,"excerpt":"\u00a0 \u00a0 (\uc6d0\ubb38) \u00a0 \u00a0 Dogs with a disorder similar to Duchenne muscular dystrophy improve after gene-editing treatment. \u00a0 \u00a0 A powerful gene-editing technique can stimulate dogs\u2019 production of an important muscle protein, a finding that takes researchers a step closer to trying the technology in humans who have a\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":2412,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=2412","url_meta":{"origin":4128,"position":4},"title":"\uc720\uc804\uc790 \uc870\uc791\uc73c\ub85c \uc2dd\ubb3c \uad11\ud569\uc131 \ud6a8\uc728 \ud5a5\uc0c1\u2026\uc0dd\uc0b0\ub7c9 40% \u2191","author":"biochemistry","date":"January 4, 2019","format":false,"excerpt":"\u00a0 \ubbf8\uad6d \uc5f0\uad6c\ud300 \"\ub2f4\ubc30\uc5d0 \uad11\ud638\ud761 \ub300\uc0ac\uacbd\ub85c \uc870\uc808 \uc720\uc804\uc790 \uc8fc\uc785\u00b7\uc7ac\ubc30 \uc2e4\ud5d8 \uc131\uacf5\" \u00a0 \ubbf8\uad6d \uc5f0\uad6c\ud300\uc774 \uc2dd\ubb3c\uc758 \uad11\ud569\uc131 \ud6a8\uc728\uc774 \ub192\uc544\uc9c0\ub3c4\ub85d \ub300\uc0ac\uacbd\ub85c\ub97c \uc870\uc808\ud558\ub294 \uc720\uc804\uc790\ub97c \uc2dd\ubb3c\uccb4\uc5d0 \uc774\uc2dd, \ub2f4\ubc43\uc78e\uc758 \uc0dd\uc0b0\ub7c9\uc744 40% \ub298\ub9ac\ub294 \ub370 \uc131\uacf5\ud588\ub2e4. \ubbf8\uad6d \uc5b4\ubc14\ub098-\uc0f4\ud398\uc778 \uc77c\ub9ac\ub178\uc774\ub300 \ub3c4\ub110\ub4dc \uc624\ub974\ud2b8 \uad50\uc218\ud300\uc740 4\uc77c \uad6d\uc81c\ud559\uc220\uc9c0 '\uc0ac\uc774\uc5b8\uc2a4'(Science)\uc5d0\uc11c \uc2dd\ubb3c\uc5d0 \uc778\uacf5 \ub300\uc0ac \uacbd\ub85c\ub97c \ud1b5\ud574 \uad11\ud638\ud761(photorespiration)\uc758 \ube44\ud6a8\uc728\uacfc \ubd80\uc791\uc6a9\uc744 \ucd5c\uc18c\ud654\ud558\ub294 \uc720\uc804\uc790\ub97c \uc8fc\uc785, \uc0dd\uc0b0\uc131\uc744\u2026","rel":"","context":"In &quot;'06. \uc5d0\ub108\uc9c0\uc640 \uc5d4\ud2b8\ub85c\ud53c'\uc640 '07. \uacfc\ud559\uacfc \ubb38\uba85' \uad00\ub828&quot;","block_context":{"text":"'06. \uc5d0\ub108\uc9c0\uc640 \uc5d4\ud2b8\ub85c\ud53c'\uc640 '07. \uacfc\ud559\uacfc \ubb38\uba85' \uad00\ub828","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=42"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":4187,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=4187","url_meta":{"origin":4128,"position":5},"title":"Highlight negative results to improve science","author":"biochemistry","date":"October 6, 2019","format":false,"excerpt":"\u00a0 \u00a0 Publishers, reviewers and other members of the scientific community must fight science\u2019s preference for positive results \u2014 for the benefit of all, says Devang Mehta. \u00a0 \u00a0 Credit: Adapted from sorbetto\/Getty \u00a0 \u00a0 Near the end of April, my colleagues and I published an\u00a0unusual scientific paper\u00a0\u2014 one reporting\u2026","rel":"","context":"In &quot;Essays on Science&quot;","block_context":{"text":"Essays on 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