{"id":2987,"date":"2019-03-29T17:42:12","date_gmt":"2019-03-29T08:42:12","guid":{"rendered":"http:\/\/163.180.4.222\/lab\/?p=2987"},"modified":"2019-03-29T17:42:12","modified_gmt":"2019-03-29T08:42:12","slug":"precise-packing-for-membrane-proteins","status":"publish","type":"post","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=2987","title":{"rendered":"Precise packing for membrane proteins"},"content":{"rendered":"<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>Although nonpolar amino acid side chains pack efficiently in membrane proteins, it has been difficult to determine how much this contributes to membrane protein stability. Designed membrane proteins have largely relied on other stabilizing interactions such as metal-ligand interactions and hydrogen bonds. Mravic\u00a0<em>et al.<\/em>\u00a0uncovered a steric packing code underlying the folding of the natural protein phospholamban, which they used to design stable membrane proteins with nonpolar interfaces. They suggest that packing of nonpolar residues plays a role in the folding and stability of many membrane proteins.<\/p>\n<p>&nbsp;<\/p>\n<p id=\"p-2\"><em>Science<\/em>, this issue p.\u00a0<a href=\"http:\/\/science.sciencemag.org\/lookup\/doi\/10.1126\/science.aav7541\">1418<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>(\uc6d0\ubb38: <a href=\"http:\/\/science.sciencemag.org\/content\/363\/6434\/1411.4?rss=1\">\uc5ec\uae30<\/a>\ub97c \ud074\ub9ad\ud558\uc138\uc694~)<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<h5><\/h5>\n<h4>Packing of apolar side chains enables accurate design of highly stable membrane proteins<\/h4>\n<p>&nbsp;<\/p>\n<p><strong>Abstract<\/strong><\/p>\n<p id=\"p-5\">The features that stabilize the structures of membrane proteins remain poorly understood. Polar interactions contribute modestly, and the hydrophobic effect contributes little to the energetics of apolar side-chain packing in membranes. Disruption of steric packing can destabilize the native folds of membrane proteins, but is packing alone sufficient to drive folding in lipids? If so, then membrane proteins stabilized by this feature should be readily designed and structurally characterized\u2014yet this has not been achieved. Through simulation of the natural protein phospholamban and redesign of variants, we define a steric packing code underlying its assembly. Synthetic membrane proteins designed using this code and stabilized entirely by apolar side chains conform to the intended fold. Although highly stable, the steric complementarity required for their folding is surprisingly stringent. Structural informatics shows that the designed packing motif recurs across the proteome, emphasizing a prominent role for precise apolar packing in membrane protein folding, stabilization, and evolution.<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>(\uc6d0\ubb38: <a href=\"http:\/\/science.sciencemag.org\/content\/363\/6434\/1418\">\uc5ec\uae30<\/a>\ub97c \ud074\ub9ad\ud558\uc138\uc694~)<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>&nbsp; &nbsp; Although nonpolar amino acid side chains pack efficiently in membrane proteins, it has been difficult to determine how much this contributes to membrane<a href=\"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=2987\" class=\"more-link\">(more&#8230;)<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2},"jetpack_post_was_ever_published":false},"categories":[33,34,29,30],"tags":[],"class_list":["post-2987","post","type-post","status-publish","format-standard","hentry","category-do-biology","category-lets-do-chemistry","category-lets-do-science","category-recent-science-news"],"aioseo_notices":[],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack-related-posts":[{"id":3941,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=3941","url_meta":{"origin":2987,"position":0},"title":"The computational protein designers","author":"biochemistry","date":"July 27, 2019","format":false,"excerpt":"\u00a0 \u00a0 A new breed of protein engineers is finding that the best way to create a molecule is to build it from scratch. \u00a0 \u00a0 By designing a protein from the ground up, researchers can create molecules with forms and functions not found in nature.Credit: Brian DalBalcon \u00a0 \u00a0\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":2533,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=2533","url_meta":{"origin":2987,"position":1},"title":"How a fever helps the immune system to battle infection","author":"biochemistry","date":"January 18, 2019","format":false,"excerpt":"\u00a0 \u00a0 The fever that accompanies many infections prompts production of heat-shock proteins, which protect cells from cold, heat and other stresses. Credit: Vicky Kasala Productions\/Getty \u00a0 \u00a0 One type of immune cell jumps into the fray after body temperature rises, according to experiments in mice. \u00a0 A fever fights\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":1865,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=1865","url_meta":{"origin":2987,"position":2},"title":"Receptor dynamics predict drug effects","author":"biochemistry","date":"September 25, 2018","format":false,"excerpt":"\u00a0 \u00a0 Science\u00a0\u00a021 Sep 2018: Vol. 361, Issue 6408, pp. 1211-1213 DOI: 10.1126\/science.361.6408.1211-r \u00a0 (\uc6d0\ubb38: \uc5ec\uae30\ub97c \ud074\ub9ad\ud558\uc138\uc694~) \u00a0 The effect of a drug on a G protein\u2013coupled receptor (GPCR) can be determined by monitoring the downstream effects of that receptor, but not for GPCRs whose signaling pathways are unclear. Yanagawa\u00a0et\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":4470,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=4470","url_meta":{"origin":2987,"position":3},"title":"Genetic light bulbs illuminate the brain","author":"biochemistry","date":"October 16, 2019","format":false,"excerpt":"\u00a0 Genetically encoded voltage indicators change colour in real time when neurons transmit electrical information, offering unprecedented insight into neural activity. \u00a0 \u00a0 Fluorescent proteins that react to voltage changes show signalling between cells in the brain of a zebrafish (Danio rerio).Credit: A.S Abdelfattah\u00a0et al.\/Science \u00a0 \u00a0 Douglas Storace still\u2026","rel":"","context":"In &quot;'12. \uc778\ub958\uc640 \ubb38\uba85'\uacfc '13. \ub1cc\uc640 \ubb38\uba85' \uad00\ub828&quot;","block_context":{"text":"'12. \uc778\ub958\uc640 \ubb38\uba85'\uacfc '13. \ub1cc\uc640 \ubb38\uba85' \uad00\ub828","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=45"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":4114,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=4114","url_meta":{"origin":2987,"position":4},"title":"Glowing DNA label illuminates a cell\u2019s fine details","author":"biochemistry","date":"September 23, 2019","format":false,"excerpt":"\u00a0 \u00a0 Fluorescent tag can be affixed to proteins or genetic structures of interest. \u00a0 \u00a0 DNA tags could help scientists to study ion channels (yellow), which allow specific ions to pass through the membrane of nerve cells (green). Credit: Patrick Landmann\/SPL \u00a0 \u00a0 \u00a0 A glowing tag made of\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":2250,"url":"https:\/\/biochemistry.khu.ac.kr\/lab\/?p=2250","url_meta":{"origin":2987,"position":5},"title":"Artificial cells gain communication skills","author":"biochemistry","date":"December 3, 2018","format":false,"excerpt":"\u00a0 \u00a0 No biologist would mistake the microscopic \u201ccells\u201d that chemical biologist Neal Devaraj and colleagues are whipping up at the University of California, San Diego (UCSD), for the real thing. Instead of the lipid membrane that swaddles our cells, these cell mimics wear a coat of plastic\u2014polymerized acrylate. And\u2026","rel":"","context":"In &quot;Let's Do Biology!&quot;","block_context":{"text":"Let's Do Biology!","link":"https:\/\/biochemistry.khu.ac.kr\/lab\/?cat=33"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]}],"jetpack_sharing_enabled":false,"jetpack_shortlink":"https:\/\/wp.me\/p9Xo1j-Mb","_links":{"self":[{"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/posts\/2987","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2987"}],"version-history":[{"count":1,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/posts\/2987\/revisions"}],"predecessor-version":[{"id":2988,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=\/wp\/v2\/posts\/2987\/revisions\/2988"}],"wp:attachment":[{"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2987"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=2987"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/biochemistry.khu.ac.kr\/lab\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2987"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}